Publications | Shuang Wu

2024

72. Wu M, Bian X, Huang B, Du Y, Sheng J, Hu S, Wang Y, Wu S.* (2024) HD-Zip proteins modify floral structures for self-pollination in tomato. Science DOI:10.1126/science.adl1982
71. Chang J, Wu S-R, You T, Wang J, Xu B, Sun B, Wu S.* (2024) Spatiotemporal formation of glands in plants is modulated by MYB-like transcription factors. Nature Communications. 15(1):2303.
70. Wu M, Bian X, Hu S, Huang B, Shen J, Du Y, Wang Y, Xu M, Xu H, Yang M, Wu S.* (2024) Gradient of HD-ZIP IV regulator coordinates cell division and endoreduplication during multi-cellular trichome morphogenesis. Plant Cell. koae077. doi: 10.1093/plcell/koae077.
69. Wu J, Li P, Zhu D, Ma H, Li M, Lai Y, Peng Y, Li H, Li S, Wei J, Bian X, Rahman A, Wu S.* (2024) SlCRCa is a key D-class gene controlling ovule fate determination in tomato. Plant Biotechnology Journal . In press.
68. Hua B, Wu J, Han X, Bian X, Xu Z, Sun C, Wang R, Zhang W, Liang F, Zhang H, Li S, Li Z, Wu, S.* (2024) Auxin homeostasis is maintained by sly-miR167-SlARF8A/B-SlGH3.4 feedback module in the development of locular and placenta tissues of tomato fruits. New Phytologist doi: 10.1111/nph.19391..
67. Wu J, Li P, Li M, Zhu D, Ma H, Xu H, Li S, Wei J, Bian X, Wang M, Lai Y, Peng Y, Li H, Rahman A, Wu S.* (2024) Heat stress impairs floral meristem termination and fruit development via affecting BR-SlCRCa cascade in tomato. Plant Commun. doi: 10.1016/j.xplc.2023.100790.

2023

66. Li M, Wu, S.* (2023) Root evolution: Evidence for convergent evolution of root meristem. Current Biology. 33(19):R1009-R1010.
65. Wu M, Chang J, Han X, Shen J, Yang L, Hu S, Huang B, Xu H, Wu S, Li P, Hua B, Yang M, Yang Z, Wu, S.* (2023) A HD-Zip transcription factor specifies fates of multicellular trichomes via dosage-dependent mechanisms. Developmental Cell 58(4):278-288.e5. (Cover Story) (Highlighted by Science 2023,397(6639):1311)
64. Wu J, Sun W, Sun C, Xu C, Li S, Li P, Xu H, Zhu D, Li M, Yang L, Wei J, Hanzawa A, Tapati SJ, Uenoyama R, Miyazaki M, Rahman A*, Wu, S.* (2023) Cold stress induces malformed tomato fruits by breaking the feedback loops of stem cell regulation in floral meristem. New Phytologist 237(6):2268-2283.
63. Huang Y, Cui J, Li M, Yang R, Hu Y, Yu X, Chen Y, Wu Q, Yao H, Yu G, Guo J, Zhang H, Wu, S.*, Cai Y*. (2023) Conservation and divergence of flg22, pep1 and nlp20 in activation of immune response and inhibition of root development. Plant Sci. Mar 22:111686.
62. Li M, Niu X, Li S, Li Q, Fu S, Wang C, Wu, S.* (2023) Intercellular signaling across plasmodesmata in vegetable species. Vegetable Research. 3:22.
61. Li M, Niu X, Li S, Fu S, Li Q, Xu M, Wang C, Wu, S.*. (2023) CRISPR/Cas9 Based Cell-Type Specific Gene Knock-Out in Arabidopsis Roots. Plants (Basel). 12(12):2365.
60. Liao D, Sun C, Li S, Tauqeer A, Bian X, Shen J, Wu, S.* (2023) The utilization and molecular mechanism of arbuscular mycorrhizal symbiosis in vegetables. Vegetable Research 3:1 doi: 10.48130/VR-2023-0001.
59. Li Y, Luo J, Han X, Chen R, Zhou Y, Yu H, Chu Z, Lu Y, Gu X, Wu S, Wang P, Kuang H, Ouyang B. (2023) Folate shapes plant root architecture by affecting auxin distribution. Plant J doi: 10.1111/tpj.16093.
58. Xu Z, Qu X, Wu, S., Wang P*. (2023) Studying the Organization of the Actin Cytoskeleton in the Multicellular Trichomes of Tomato. Methods Mol Biol. 2604:327-335.
57. Zhao J, Bo K, Pan Y, Li Y, Yu D, Li C, Chang J, Wu, S., Wang Z, Zhang X, Gu X, Weng Y*. (2023) Phytochrome-interacting factor PIF3 integrates phytochrome B and UV-B signaling pathways to regulate gibberellin- and auxin-dependent growth in cucumber hypocotyls. J Exp Bot. 74(15):4520-4539.

2022

56. Liao D, Sun C, Liang H, Wang Y, Bian X, Dong C, Niu X, Yang M, Xu G*, Chen A*, Wu, S.* (2022) SlSPX1-SlPHRs modulates the suppression of arbuscular mycorrhizal symbiosis by phosphate repletion in tomato. Plant Cell doi: 10.1093/plcell/koac212.
55. Li M, Li P, Wang C, Xu H, Wang M, Wang Y, Niu X, Xu M, Wang H, Qin Y, Tang W, Bai M, Wang W, Wu, S.* (2022) Brassinosteroid signaling restricts root lignification by antagonizing SHORT-ROOT function in Arabidopsis. Plant Physiology doi: 10.1093/plphys/kiac327. .
54. Xu H, Wang C, Shao G, Liu P, Wu S, Cao P, Jiang P, Wang S, Zhu H, Lin X, Tauqeer A, Lin Y, Chen W, Huang W, Wen Q, Zhong F*, Wu, S.* (2022)The reference genome and full-length transcriptome of pakchoi provide insights into the cuticle formation and heat adaption. Horticulture Research 9:uhab080.
53. Xu H, Liu P, Wang C, Wu S, Lin Q, Sun W, Huang B, Xu M, Tauqeer A, Wu, S.* (2022) Transcriptional Networks Regulating Suberin and Lignin Biosynthesis Link Development and ABA Response in Root Endodermis. Plant Physiology doi: 10.1093/plphys/kiac298.
52. Li M, Wang M, Lin Q, Wang M, Niu X, Cheng J, Xu M, Qin Y, Liao X, Xu J, Wu, S.* (2022) Symplastic communication in root cap directs auxin distribution to modulate root development. J Integr Plant Biol., 64(4):859-870.
51. Tian Y, Zhao N, Wang M, Zhou W, Guo J, Han C, Zhou C, Wang W, Wu S, Tang W, Fan M, Bai MY*. (2022) Integrated regulation of periclinal cell division by transcriptional module of BZR1-SHR in Arabidopsis roots. New Phytol., 233(2):795-808.
50. Yang L, Zhu M, Yang Y, Wang K, Che Y, Yang S, Wang J, Yu X, Li L, Wu, S, Palme K, Li X. (2022) CDC48B facilitates the intercellular trafficking of SHORT-ROOT during radial patterning in roots.
J Integr Plant Biol., 64(4):843-858.

2021

49. Hua B, Chang J, Han X, Xu Z, Hu S, Li S, Wang R, Yang L, Yang M, Wu S, Shen J, Yu X, Wu, S.* (2021) H and HL synergistically regulate jasmonate-triggered trichome formation in tomato. Horticulture Research In press.
48. Wang C, Li M, Zhao Y, Liang N, Li H, Li P, Yang L, Xu M, Bian X, Wang M, Wu S, Niu X, Wang M, Li X , Sang Y, Dong W, Wang E, Gallagher KL, Wu S.* (2021) SHORT-ROOT paralogs mediate feed-forward regulation of D-type cyclin to promote nodule formation in soybean. Proc Natl Acad Sci U S A. 119(3):e2108641119..
47. Chang J, Zhang F, Qin H, Liu P, Wang J, Wu S.* (2021) Mutation of SlARC6 leads to tissue-specific defects in chloroplast development in tomato. Horticulture Research 8(1):127.
46. Xu M, Gu X, Yu Q, Liu Y, Bian X, Wang R, Yang M, Wu S.* (2021) Time-course observation of the reconstruction of stem cell niche in the intact root. Plant Physiology 185(4):1652-1665.
45. Chang J, Yang J, Wang J, Wu S.* (2021) Comprehensive observation of trichome development in Micro-tom tomato. Vegetable Research 1 (1), 1-9
44. Wang Z, Rong D, Chen D, Xiao Y, Liu R, Wu S, Yamamuro C. (2020) Salicylic acid promotes quiescent center cell division through ROS accumulation and down-regulation of PLT1, PLT2, and WOX5. J Integr Plant Biol. doi: 10.1111/jipb.13020.
43. Bai Y, Shen Y, Zhang Z, Jia Q, Xu M, Zhang T, Fang H, Yu X, Li L, Liu D, Qi X, Chen Z, Wu S, Zhang Q, Liang C. (2021) A GPAT1 Mutation in Arabidopsis Enhances Plant Height but Impairs Seed Oil Biosynthesis. Int J Mol Sci. 22(2):785.

2020

42. Hua B, Chang J, Han X, Xu Z, Xu M, Yang M, Yang C, Ye Z, Wu S.* (2020) HOMEODOMAIN PROTEIN8 Mediates Jasmonate-Triggered Trichome Elongation in Tomato. New Phytologist (3):1063-1077.
41. Yang L, Qi S, Touqeer A, Li H, Zhang X*, Liu X*, Wu S.* (2020) SlGT11 controls floral organ patterning and floral determinacy in tomato. BMC Plant Biology 20(1):562
40. Hua B, Chang J, Wu M, Xu Z, Zhang F, Yang M, Xu H, Wang L, Chen XY, Wu, S.* (2020) Mediation of JA signaling in glandular trichomes by the woolly/SlMYC1 regulatory module improves pest resistance in tomato. Plant Biotechnology Journal (2):375-393.
39. Wu J, Cheng J, Xu C, Qi S, Sun W, Wu, S.* (2020) AUREA maintains the balance between chlorophyll synthesis and adventitious root formation in tomato. Horticulture Research 7:166.
38. Li P, Cai Q, Wang H, Li S, Cheng J, Li H, Yu Q, Wu, S.* (2020) Hydrogen peroxide homeostasis provides beneficial micro-environment for SHR-mediated periclinal division in Arabidopsis root. New Phytologist 228(6):1926-1938.
37. Wang C, Wang H, Li P, Li H, Xu C, Cohen H, Aharoni A, Wu, S.* (2020) Developmental programs interact with ABA to coordinate root suberization in Arabidopsis. Plant J. 104(1):241-251.
36. Zhang L, Zhao Y, Liang H, Li X, Gallagher KL*, Wu, S.* (2020) Gateway-compatible vectors for functional analysis of proteins in cell type specific manner. Plant Methods 16:93.
35. Shi P, Xie Y, Xie R, Lin Z, Yao H, Wu, S.* (2020) An Integrated Pharmacokinetic Study of an Acanthopanax senticosus Extract Preparation by Combination of Virtual Screening, Systems Pharmacology, and Multi-Component Pharmacokinetics in Rats. Front Pharmacol. 11:1295.
34. Dong W, Zhu Y, Chang H, Wang C, Yang J, Shi J, Gao J, Yang W, Lan L, Wang Y, Zhang X, Dai H, Miao Y, Xu L, He Z, Song C, Wu S, Wang D, Yu N, Wang E. (2020) An SHR-SCR module specifies legume cortical cell fate to enable nodulation. Nature 589(7843):586-590.
33. Cohen H, Fedyuk V, Wang C, Wu S, Aharoni A. (2020) SUBERMAN regulates developmental suberization of the Arabidopsis root endodermis. Plant J. 102(3):431-447.

2019

32.Chang J, Xu Z, Li M, Yang M, Qin H, Yang J, Wu, S.*（2019）Spatiotemporal cytoskeleton organizations determine morphogenesis of multicellular trichomes in tomato. PLoS Genetics 15(10): e1008438.
31. Xu M, Gu X, Liang N, Bian X, Wang H, Qin Y, Pi L, Wu, S.* (2019) Intersected functional zone of transcriptional regulators patterns stemness within stem cell niche of root apical meristem. J Integr Plant Biol. 62(7):897-911.
30. Spiegelman Z, Wu, S, Gallagher KL (2019) A role for the endoplasmic reticulum in the cell-to-cell movement of SHORT-ROOT. Protoplasma 256(5):1455-1459.
29. Wu ML, Cui YC, Ge L, Cui LP, Xu ZC, Zhang HY, Wang ZJ, Zhou D, Wu S, Chen L, Cui H. (2019) NbCycB2 represses Nbwo activity via a negative feedback loop in tobacco trichome development. J Exp Bot. 71(6):1815-1827.
28. Qi SL, Lin QF, Feng XJ, Han HL, Liu J, Zhang L, Wu S, Le J, Blumwald E, Hua XJ. (2019) IDD16 negatively regulates stomatal initiation via trans-repression of SPCH in Arabidopsis. Plant Biotechnol J. 17(7):1446-1457.

2018

27. Li, P., Yu, Q., Gu, X., Xu, C., Qi, S., Wang, H., Zhong, F., Baskin, T.B., Rahman, A., Wu, S.* (2018) Construction of a Functional Casparian Strip in Non-endodermal Lineages Is Orchestrated by Two Parallel Signaling Systems in Arabidopsis thaliana. Current Biology 28(17):2777-2786.e2.
26. Xu, M., Qi, S., Chen, F., Zhang, L., Wu, S.* (2018) Loss or duplication of key regulatory genes coincides with environmental adaptation of stomatal complex in Nymphaea colorata and Kalanchoe laxiflora. Horticulture Research 5:42. doi: 10.1038/s41438-018-0048-8.
25. Li, P., Yang, M., Chang, J., Wu, J., Zhong, F., Rahman, A., Qin, H. and Wu, S.* (2018) Spatial Expression and Functional Analysis of Casparian Strip Regulatory Genes in Endodermis Reveals the Conserved Mechanism in Tomato. Front. Plant Sci. 9:832. doi: 10.3389/fpls.2018.00832
24. Zhong, F., Wang, S., Roan, S., Lin, B., Chen, I., Lin, Y., Pang, J., Wu, S.* (2018) Characterization of nitrate assimilation in Lactuca sativa L. under different nitrogen sources. Plant Growth Regulation 86 (1), 1-10.
23. Zhong F, Zhou X, Lin Y, Chen X, Xu R, Wang S, Lin Y, Pang J, Wu, S.* (2018) Sepal morphology affects flower and fruit development in Luffa cylindrica. Fresenius Environmental Bulletin 27 (6), 4006-4013

2017

22. Yu Q, Li P, Liang N, Wang H, Xu M, Wu, S. *（2017）Specifying cell fate in roots requires coordinative lineage instruction and positional reprogramming. Plant Physiol. 175(2):816-827.
21. Liu, Y., Xu, M., Liang, N., Zheng, Y., Yu, Q., Wu, S. * (2017) Symplastic communication spatially directs local auxin biosynthesis to maintain root stem cell niche in Arabidopsis. Proc Natl Acad Sci U S A. 114(15):4005-4010.
20. Henry S, Dievart A, Divol F, Pauluzzi G, Meynard D, Swarup R, Wu S., Gallagher KL, Perin C. * (2017) SHR overexpression induces the formation of supernumerary cell layers with cortex cell identity in rice. Developmental biology 425 (1), 1-7

2016

19. Wu, S.*, O'Lexy, R., Xu, M., Sang, Y., Chen, X., Yu, Q. & Gallagher, K.* (2016) A Symplastic signaling instructs cell division, cell expansion, and cell polarity in the ground tissue of Arabidopsis thaliana roots. Proc Natl Acad Sci U S A. 113(41):11621-11626.
18. Yang, B., Zhou, X., Xu, R., Wang, J., Lin, Y., Pang, J., Wu, S. *, Zhong, F. * (2016) Comprehensive Analysis of Photosynthetic Characteristics and Quality Improvement of Purple Cabbage under Different Combinations of Monochromatic Light. Front Plant Sci. 29;7:1788.
17. Chen, X., Wu, S., Liu, Z., Friml, J. (2016) Environmental and Endogenous Control of Cortical Microtubule Orientation. Trends Cell Biol. 26(6):409-19.

2015 and before

16. Wu, S., Hayashi, T., Lee, C.M., Price, S., Divol, F., Henry, S., Pauluzzi, G., Perin, C. & Gallagher, K. (2014) A plausible mechanism, based upon SHORT-ROOT movement, for regulating the number of cortex cell layers in roots. Proc Natl Acad Sci U S A. 111(45):16184-9.
15. Wu, S. & Gallagher, K.L.(2014) The movement of the non-cell-autonomous transcription factor, SHORT-ROOT relies on the endomembrane system. Plant J. 80(3):396-409.
14. Wu, S. & Gallagher, K.L.(2015) Techniques for Assessing the Effects of Pharmacological Inhibitors on Intercellular Protein Movement. Methods in Molecular Biology.1217:245-58.
13. Wu, S.& Gallagher, K.L. (2013) Intact microtubules are required for the intercellular movement of the SHORT-ROOT transcription factor. Plant J. 74(1):148-159.
12. Wu, S., Baskin, T.I. & Gallagher, K.L. (2012) Mechanical fixation techniques for processing and orienting delicate samples, such as the root of Arabidopsis thaliana, for light or electron microscopy. Nature Protocols. 7(6):1113-24.
11. Wu, S. & Gallagher, K.L. (2012) Transcription Factors on the Move. Curr Opin Plant Biol. 15(6):645-651.
10. Koizumi, K.*, Wu, S.* , MacRae-Crerar, A., Gallagher, K.L. (2011) An essential protein that interacts with endosomes and promotes movement of the SHORT-ROOT transcription factor. Current Biology. 21(18):1559-1564.
09. Wu, S. & Gallagher, K.L. (2011) Mobile protein signals in plant development. Curr Opin Plant Biol. 14(5):563-70
08. Wu, S.*, Koizumi, K.*, Macrae-Crerar, A., Gallagher, K.L. (2011) Assessing the utility of photoswitchable fluorescent proteins for tracking intercellular protein movement in the Arabidopsis root. PLoS One. 2011; 6(11):e27536.
07. Wu, S., Scheible, W. R., Schindelasch, D., Van Den Daele H., De Veylder L., & Baskin, T. I. (2010) A conditional mutation in Arabidopsis thaliana separase induces chromosome non-disjunction, aberrant morphogenesis and cyclin B1;1 stability. Development.137(6):953-961.
06. Koizumi, K., Hayashi, T., Wu, S., Gallagher, K.L. (2012) The SHORT-ROOT protein acts as a mobile, dose-dependent signal in patterning the ground tissue. Proc Natl Acad Sci U S A. 109(32):13010-5.
05. Sang, Y., Silva-Ortega, C.O., Wu, S., Yamaguchi, N., Wu, M.F., Pfluger, J., Gillmor, S., Gallagher, K.L., Wagner, D. (2012) Mutations in two non-canonical Arabidopsis SWI2/SNF2 chromatin remodeling ATPases cause embryogenesis and stem cell maintenance defects. Plant J. 72(6): 1000-1014.
04. Vatén, A., Dettmer, J., Wu, S., Stierhof, Y.D., Miyashima, S., Yadav, S.R., Roberts, C.J., Campilho, A., Bulone, V., Lichtenberger, R., Lehesranta, S., Mähönen, A.P., Kim, J.Y., Jokitalo, E., Sauer, N., Scheres, B., Nakajima, K., Carlsbecker, A., Gallagher, K.L., Helariutta, Y. (2011) Callose biosynthesis regulates symplastic trafficking during root development. Developmental Cell. 21(6):1144-1155.
03. Yang, X., Boateng, K.A., Yuan, L., Wu, S., Baskin, T.I., Makaroff, C.A. (2011) The radially swollen 4 separase mutation of Arabidopsis thaliana blocks chromosome disjunction and disrupts the radial microtubule system in meiocytes. PLoS One. 29;6(4):e19459.
02. Rahman, A., Takahashi, M,, Shibasaki, K., Wu, S., Inaba T., Tsurumi, S. & Baskin, T. I. (2010) Gravitropism of Arabidopsis thaliana roots requires the polarization of PIN2 toward the root tip in meristematic cortical cells. Plant Cell. 22(6):1762-76
01. Bischoff, V., Cookson, S. J., Wu, S. & Scheible, W. R. (2009) Thaxtomin A affects CESA-complex density, expression of cell wall genes, cell wall composition, and causes ectopic lignification in Arabidopsis thaliana seedlings. J. Exp. Bot. 60(3): 955-65.